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3754toolsBIOINFORMATICS
3266toolsNUCLEIC ACIDS RESEARCH
1956toolsBRIEFINGS IN BIOINFORMATICS
1784toolsBMC BIOINFORMATICS
1035toolsJournal of Chemical Information and Modeling
863toolsNature Communications
712toolsGENOME BIOLOGY
701toolsScientific Reports
530toolsNATURE METHODS
510toolsComputational and Structural Biotechnology Journal
454toolsBMC GENOMICS
451toolsPLoS One
IBS2.0
Illustrator for Biological Sequences
2022.05.2114979
autoRPA
A web server for constructing cancer staging models by recursive partitioning analysis
2021.12.125805
BBCancer
An expression atlas of blood-based biomarkers in the early diagnosis of cancers
2021.09.135213
lnCAR1.0
A comprehensive resource for lncRNAs from Cancer Arrays
2021.09.103702
DeepCPI
A Deep Learning-based Framework for Large-scale in silico Drug Screening
2022.01.283730
GPS-SUMO1.0
A tool for the prediction of sumoylation sites and SUMO-interaction motifs
2022.01.013033
DeepNitro1.0
Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning
2021.09.132790
Meskit1.0.0
Analyze and Visualize Multi-region Whole-exome Sequencing Data
2021.09.082352
Dyn_Nomo_HBP
Development and Validation of a Nomogram-Based Prognostic Model to Predict High Blood Pressure in Children and Adolescents-Findings From 342,736 Individuals in China.
PredictICUStay
Comparison of Four Machine Learning Techniques for Prediction of Intensive Care Unit Length of Stay in Heart Transplantation Patients.
dynamic nomogram
Development and validation of a carotid atherosclerosis risk prediction model based on a Chinese population.
Glioma Survival Calculator
An online survival predictor in glioma patients using machine learning based on WHO CNS5 data.
Dynamic Nomogram Calculator
Development and External Validation of a Dynamic Nomogram With Potential for Risk Assessment of Ruptured Multiple Intracranial Aneurysms.
Dynamic Nomogram
A Dynamic Nomogram to Predict the Risk of Stroke in Emergency Department Patients With Acute Dizziness.
visualized nomogram model
A visualized nomogram to online predict futile recanalization after endovascular thrombectomy in basilar artery occlusion stroke.
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
CoreGenes5.0
CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes.
CoVigator
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
FCCP
An atlas of fragrance chemicals in children's products.
COVID-19 Behavior Determinants Database
COVID-19 behavior determinants dataset.
SynVar
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Liability Predictor
Lies and Liabilities: Computational Assessment of High-Throughput Screening Hits to Identify Artifact Compounds.
Onkopipe
Onkopipe: A Snakemake Based DNA-Sequencing Pipeline for Clinical Variant Analysis in Precision Medicine.
ATCC Genome Portal
The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.
FusionAI
FusionAI, a DNA-sequence-based deep learning protocol reduces the false positives of human fusion gene prediction.
CLRP_EPv2
Update of the CLRP eye plaque brachytherapy database for photon-emitting sources.
3do-bodycomp-analyzer
A device-agnostic shape model for automated body composition estimates from 3D optical scans.
exRNAdisease
exRNAdisease: An extracellular RNA transcriptome atlas in human diseases.
CoVigator
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
SynVar
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Onkopipe
Onkopipe: A Snakemake Based DNA-Sequencing Pipeline for Clinical Variant Analysis in Precision Medicine.
CLRP_EPv2
Update of the CLRP eye plaque brachytherapy database for photon-emitting sources.
exRNAdisease
exRNAdisease: An extracellular RNA transcriptome atlas in human diseases.
RNAmining
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction.
ConnecTF
ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.
OrchidBase 5.0
OrchidBase 5.0: updates of the orchid genome knowledgebase.
MDSi
MDSi: Multi-omics Database for Setaria italica.
Plant GARDEN
Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species.
LNCTRN
Transcriptional network modulated by the prognostic signature transcription factors and their long noncoding RNA partners in primary prostate cancer.
MutaXome
MutaXome: A Novel Database for Identified Somatic Variations of In silico Analyzed Cancer Exome Datasets.
MRLocus
MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity.
CengenApp
Molecular topography of an entire nervous system.
tncRNA Toolkit
tncRNA Toolkit: A pipeline for convenient identification of RNA (tRNA)-derived non-coding RNAs.
Cancer-mbQTL
Pan-Cancer Analysis of Microbiome Quantitative Trait Loci.
3D-Scere
Additional insights into the organization of transcriptional regulatory modules based on a 3D model of the Saccharomyces cerevisiae genome.
DOE JGI Metagenome Workflow
DOE JGI Metagenome Workflow.
Evolutionary Stability Optimizer (ESO)
Evolutionary Stability Optimizer (ESO): A Novel Approach to Identify and Avoid Mutational Hotspots in DNA Sequences While Maintaining High Expression Levels.
Resource for querying gene expression variation
Beyond the reference: gene expression variation and transcriptional response to RNA interference in Caenorhabditis elegans.
Dyn_Nomo_HBP
Development and Validation of a Nomogram-Based Prognostic Model to Predict High Blood Pressure in Children and Adolescents-Findings From 342,736 Individuals in China.
PredictICUStay
Comparison of Four Machine Learning Techniques for Prediction of Intensive Care Unit Length of Stay in Heart Transplantation Patients.
dynamic nomogram
Development and validation of a carotid atherosclerosis risk prediction model based on a Chinese population.
Glioma Survival Calculator
An online survival predictor in glioma patients using machine learning based on WHO CNS5 data.
Dynamic Nomogram Calculator
Development and External Validation of a Dynamic Nomogram With Potential for Risk Assessment of Ruptured Multiple Intracranial Aneurysms.
Dynamic Nomogram
A Dynamic Nomogram to Predict the Risk of Stroke in Emergency Department Patients With Acute Dizziness.
visualized nomogram model
A visualized nomogram to online predict futile recanalization after endovascular thrombectomy in basilar artery occlusion stroke.
iCafe (Intracranial Artery Feature Extraction)
Quantitative Assessment of the Intracranial Vasculature of Infants and Adults Using iCafe (Intracranial Artery Feature Extraction).
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
CoreGenes5.0
CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes.
FCCP
An atlas of fragrance chemicals in children's products.
COVID-19 Behavior Determinants Database
COVID-19 behavior determinants dataset.
AntDAS2TSC
A new platform for untargeted UHPLC-HRMS data analysis to address the time-shift problem.
WIKIBrainStem
WIKIBrainStem: An online atlas to manually segment the human brainstem at the mesoscopic scale from ultrahigh field MRI.
WeBrain
WeBrain: A web-based brainformatics platform of computational ecosystem for EEG big data analysis.
CovidGraph
CovidGraph: Integrating COVID-19 Data.
SynVar
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Ring Replacement Recommender
Ring replacement recommender: Ring modifications for improving biological activity.
ToCoDDB
Topology-Based and Conformation-Based Decoys Database: An Unbiased Online Database for Training and Benchmarking Machine-Learning Scoring Functions.
CovidGraph
Exploring Use Cases for CovidGraph.
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
DRAVP
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins.
GeoMine
Searching Geometric Patterns in Protein Binding Sites and Their Application to Data Mining in Protein Kinase Structures.
Ring Replacement Recommender
Ring replacement recommender: Ring modifications for improving biological activity.
ToCoDDB
Topology-Based and Conformation-Based Decoys Database: An Unbiased Online Database for Training and Benchmarking Machine-Learning Scoring Functions.
Protein Solubilizing Server (PSS)
Enabling QTY Server for Designing Water-Soluble α-Helical Transmembrane Proteins.
CLRP_EPv2
Update of the CLRP eye plaque brachytherapy database for photon-emitting sources.
3do-bodycomp-analyzer
A device-agnostic shape model for automated body composition estimates from 3D optical scans.
DeepDN_iGlu
DeepDN_iGlu: prediction of lysine glutarylation sites based on attention residual learning method and DenseNet.
NIFtHool
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks.
ConnecTF
ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.
Pear Genomics Database (PGDB)
The pear genomics database (PGDB): a comprehensive multi-omics research platform for Pyrus spp.
GGDB
GGDB: A Grameneae genome alignment database of homologous genes hierarchically related to evolutionary events.
AB-Amy
AB-Amy: machine learning aided amyloidogenic risk prediction of therapeutic antibody light chains.
LNCTRN
Transcriptional network modulated by the prognostic signature transcription factors and their long noncoding RNA partners in primary prostate cancer.
Calpla
Dynamics of circulating calprotectin accurately predict the outcome of moderate COVID-19 patients.
Deep-AVPpred
Deep-AVPpred: Artificial Intelligence Driven Discovery of Peptide Drugs for Viral Infections.
MutaXome
MutaXome: A Novel Database for Identified Somatic Variations of In silico Analyzed Cancer Exome Datasets.
EnDL-HemoLyt
EnDL-HemoLyt: Ensemble Deep Learning-based Tool for Identifying Therapeutic Peptides with Low Hemolytic Activity.
ESKAPEE-MICpred
Artificial intelligence-based model for predicting the minimum inhibitory concentration of antibacterial peptides against ESKAPEE pathogens.
PredictICUStay
Comparison of Four Machine Learning Techniques for Prediction of Intensive Care Unit Length of Stay in Heart Transplantation Patients.
dynamic nomogram
Development and validation of a carotid atherosclerosis risk prediction model based on a Chinese population.
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
CoreGenes5.0
CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes.
DRAVP
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins.
CoVigator
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
FCCP
An atlas of fragrance chemicals in children's products.
COVID-19 Behavior Determinants Database
COVID-19 behavior determinants dataset.
AntDAS2TSC
A new platform for untargeted UHPLC-HRMS data analysis to address the time-shift problem.
Marmoset Brain Mapping V3
Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates.
GeoMine
Searching Geometric Patterns in Protein Binding Sites and Their Application to Data Mining in Protein Kinase Structures.
SynVar
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Ring Replacement Recommender
Ring replacement recommender: Ring modifications for improving biological activity.
CovidGraph
Exploring Use Cases for CovidGraph.
DruMAP
DruMAP: A Novel Drug Metabolism and Pharmacokinetics Analysis Platform.
smProdrugs
smProdrugs: A repository of small molecule prodrugs.
literature-cli
Development of a Command Line Interface for the Analysis of Result Sets from Automated Queries to Literature Databases.
Liability Predictor
Lies and Liabilities: Computational Assessment of High-Throughput Screening Hits to Identify Artifact Compounds.
Onkopipe
Onkopipe: A Snakemake Based DNA-Sequencing Pipeline for Clinical Variant Analysis in Precision Medicine.
ATCC Genome Portal
The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.
DRAVP
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins.
FCCP
An atlas of fragrance chemicals in children's products.
Marmoset Brain Mapping V3
Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates.
GeoMine
Searching Geometric Patterns in Protein Binding Sites and Their Application to Data Mining in Protein Kinase Structures.
Ring Replacement Recommender
Ring replacement recommender: Ring modifications for improving biological activity.
ToCoDDB
Topology-Based and Conformation-Based Decoys Database: An Unbiased Online Database for Training and Benchmarking Machine-Learning Scoring Functions.
DruMAP
DruMAP: A Novel Drug Metabolism and Pharmacokinetics Analysis Platform.
smProdrugs
smProdrugs: A repository of small molecule prodrugs.
Liability Predictor
Lies and Liabilities: Computational Assessment of High-Throughput Screening Hits to Identify Artifact Compounds.
Protein Solubilizing Server (PSS)
Enabling QTY Server for Designing Water-Soluble α-Helical Transmembrane Proteins.
3do-bodycomp-analyzer
A device-agnostic shape model for automated body composition estimates from 3D optical scans.
MCR toolkit
MCR toolkit: A GPU-based toolkit for multi-channel reconstruction of preclinical and clinical x-ray CT data.
CySGAN
3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs.
ZoomVar
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants.
teamtomo
A flexible framework for multi-particle refinement in cryo-electron tomography.
ADMETboost
ADMETboost: a web server for accurate ADMET prediction.
Sequence Coverage Visualizer
Sequence Coverage Visualizer: A Web Application for Protein Sequence Coverage 3D Visualization.
dmCCS
High-Throughput Measurement and Machine Learning-Based Prediction of Collision Cross Sections for Drugs and Drug Metabolites.
oPestTL
The Open Pesticide Transition Library (oPestTL).
quarTeT
quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification.
Dyn_Nomo_HBP
Development and Validation of a Nomogram-Based Prognostic Model to Predict High Blood Pressure in Children and Adolescents-Findings From 342,736 Individuals in China.
PredictICUStay
Comparison of Four Machine Learning Techniques for Prediction of Intensive Care Unit Length of Stay in Heart Transplantation Patients.
ML network calculator
The predictors of death within 1 year in acute ischemic stroke patients based on machine learning.
dynamic nomogram
Development and validation of a carotid atherosclerosis risk prediction model based on a Chinese population.
Glioma Survival Calculator
An online survival predictor in glioma patients using machine learning based on WHO CNS5 data.
Dynamic Nomogram Calculator
Development and External Validation of a Dynamic Nomogram With Potential for Risk Assessment of Ruptured Multiple Intracranial Aneurysms.
Dynamic Nomogram
A Dynamic Nomogram to Predict the Risk of Stroke in Emergency Department Patients With Acute Dizziness.
visualized nomogram model
A visualized nomogram to online predict futile recanalization after endovascular thrombectomy in basilar artery occlusion stroke.
iCafe (Intracranial Artery Feature Extraction)
Quantitative Assessment of the Intracranial Vasculature of Infants and Adults Using iCafe (Intracranial Artery Feature Extraction).
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
CoreGenes5.0
CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes.
DRAVP
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins.
CoVigator
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
FCCP
An atlas of fragrance chemicals in children's products.
COVID-19 Behavior Determinants Database
COVID-19 behavior determinants dataset.
AntDAS2TSC
A new platform for untargeted UHPLC-HRMS data analysis to address the time-shift problem.
WIKIBrainStem
WIKIBrainStem: An online atlas to manually segment the human brainstem at the mesoscopic scale from ultrahigh field MRI.
Spinal Cord Toolbox
Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning.
ScLimbic
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images.
WeBrain
WeBrain: A web-based brainformatics platform of computational ecosystem for EEG big data analysis.
Dyn_Nomo_HBP
Development and Validation of a Nomogram-Based Prognostic Model to Predict High Blood Pressure in Children and Adolescents-Findings From 342,736 Individuals in China.
PredictICUStay
Comparison of Four Machine Learning Techniques for Prediction of Intensive Care Unit Length of Stay in Heart Transplantation Patients.
ML network calculator
The predictors of death within 1 year in acute ischemic stroke patients based on machine learning.
dynamic nomogram
Development and validation of a carotid atherosclerosis risk prediction model based on a Chinese population.
Glioma Survival Calculator
An online survival predictor in glioma patients using machine learning based on WHO CNS5 data.
Dynamic Nomogram Calculator
Development and External Validation of a Dynamic Nomogram With Potential for Risk Assessment of Ruptured Multiple Intracranial Aneurysms.
Dynamic Nomogram
A Dynamic Nomogram to Predict the Risk of Stroke in Emergency Department Patients With Acute Dizziness.
visualized nomogram model
A visualized nomogram to online predict futile recanalization after endovascular thrombectomy in basilar artery occlusion stroke.
iCafe (Intracranial Artery Feature Extraction)
Quantitative Assessment of the Intracranial Vasculature of Infants and Adults Using iCafe (Intracranial Artery Feature Extraction).
dynamic nomogram
An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage.
CoreGenes5.0
CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes.
DRAVP
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins.
CoVigator
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
FCCP
An atlas of fragrance chemicals in children's products.
COVID-19 Behavior Determinants Database
COVID-19 behavior determinants dataset.
AntDAS2TSC
A new platform for untargeted UHPLC-HRMS data analysis to address the time-shift problem.
Marmoset Brain Mapping V3
Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates.
WIKIBrainStem
WIKIBrainStem: An online atlas to manually segment the human brainstem at the mesoscopic scale from ultrahigh field MRI.
Spinal Cord Toolbox
Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning.
GeoMine
Searching Geometric Patterns in Protein Binding Sites and Their Application to Data Mining in Protein Kinase Structures.
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