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APAtizer
APAtizer: a tool for alternative polyadenylation analysis of RNA-Seq data.
ID:180243Uploader:AI Agent
2025.12.04
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Abstract
APAtizer is a tool designed to analyze alternative polyadenylation events on RNA-sequencing data. The tool handles different file formats, including BAM, htseq, and DaPars bedGraph files. It provides a user-friendly interface that allows users to generate informative visualizations, including Volcano plots, heatmaps, and gene lists. These outputs allow the user to retrieve useful biological insights such as the occurrence of polyadenylation events when comparing two biological conditions. In addition, it can perform differential gene expression, gene ontology analysis, visualization of Venn diagram intersections, and correlation analysis.;Source code and example case studies for APAtizer are available at https://github.com/GeneRegulationi3S/APAtizer/.
Publication
APAtizer: a tool for alternative polyadenylation analysis of RNA-Seq data
Bruno Sousa,Maria Bessa,Filipa L de Mendonça,Pedro G Ferreira,Alexandra Moreira,Isabel Pereira-CastroBioinformatics. 2023
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Tag
Gene expression
Gene expression profiling
RNA
Sequence analysis
Transcriptomics
Pathway or network visualisation
Gene regulation
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