MUNDO

MUNDO: protein function prediction embedded in a multispecies world.

2026.07.0300

cblaster

cblaster: a remote search tool for rapid identification and visualization of homologous gene clusters.

2026.07.0300

Sequoia

Secondary structure assignment of proteins in the absence of sequence information.

2026.07.0300

Cutevariant

Cutevariant: a standalone GUI-based desktop application to explore genetic variations from an annotated VCF file.

2026.07.0300

Light attention

Light attention predicts protein location from the language of life.

2026.07.0300

SEQEL

SEQEL: a tool for biological sequence manipulation in Emacs.

2026.07.0300

MMCode

An expectation-maximization approach to quantifying protein stoichiometry with single-molecule imaging.

2026.07.0300

ResCap

ResCap: plant resistance gene prediction and probe generation pipeline for resistance gene sequence capture.

2026.07.0300

CCWeights

CCWeights: an R package and web application for automated evaluation and selection of weighting factors for accurate quantification using linear calibration curve.

2026.07.0300

App-SpaM

App-SpaM: phylogenetic placement of short reads without sequence alignment.

2026.07.0300

LRez

LRez: a C++ API and toolkit for analyzing and managing Linked-Reads data.

2026.07.0300

Omics Notebook

Omics Notebook: robust, reproducible and flexible automated multiomics exploratory analysis and reporting.

2026.07.0300

RibDif

RibDif: can individual species be differentiated by 16S sequencing?

2026.07.0300

receptor2tfDiffusion

Identifying anti-TNF response biomarkers in ulcerative colitis using a diffusion-based signalling model.

2026.07.0300

BIONDA

BIONDA: a free database for a fast information on published biomarkers.

2026.07.0300

MSABrowser

MSABrowser: dynamic and fast visualization of sequence alignments, variations and annotations.

2026.07.0300

Mirage

Mirage: estimation of ancestral gene-copy numbers by considering different evolutionary patterns among gene families.

2026.07.0300

Chemsearch

Chemsearch: collaborative compound libraries with structure-aware browsing.

2026.07.0300

PathBIX

PathBIX-a web server for network-based pathway annotation with adaptive null models.

2026.07.0300

ConoDictor 2.0

Improved prediction of conopeptide superfamilies with ConoDictor 2.0.

2026.07.0300

Aquila_stLFR

Aquila_stLFR: diploid genome assembly based structural variant calling package for stLFR linked-reads.

2026.07.0300

CLARINET

CLARINET: efficient learning of dynamic network models from literature.

2026.07.0300

PingPong

Comparative genome analysis using sample-specific string detection in accurate long reads.

2026.07.0300

Hierarchical Meta-Storms

Hierarchical Meta-Storms enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing.

2026.07.0300

3DFI

3DFI: a pipeline to infer protein function using structural homology.

2026.07.0300

CO-VAE

Generating tertiary protein structures via interpretable graph variational autoencoders.

2026.07.0300

AsMac

Alignment-free comparison of metagenomics sequences via approximate string matching.

2026.07.0300

P-smoother

P-smoother: efficient PBWT smoothing of large haplotype panels.

2026.07.0300

NSB

Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model.

2026.07.0300

fdrci

fdrci: FDR confidence interval selection and adjustment for large-scale hypothesis testing.

2026.07.0300

SuffPCR

Sufficient principal component regression for pattern discovery in transcriptomic data.

2026.07.0300

COT

COT: an efficient and accurate method for detecting marker genes among many subtypes.

2026.07.0300

HPiP

HPiP: an R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approach.

2026.07.0300

refgenie Data Manager tool

Expanding the Galaxy's reference data.

2026.07.0300

NeoSplice

NeoSplice: a bioinformatics method for prediction of splice variant neoantigens.

2026.07.0300

Pollock

Pollock: fishing for cell states.

2026.07.0300

ZincBind

GraphQL for the delivery of bioinformatics web APIs and application to ZincBind.

2026.07.0300

Gene and Drug Landing Page Aggregator (GDLPA)

Gene and drug landing page aggregator.

2026.07.0300

CODAK

Compositional Data Analysis using Kernels in mass cytometry data.

2026.07.0300

LYRUS

LYRUS: a machine learning model for predicting the pathogenicity of missense variants.

2026.07.0300